species:   Fugra
pid:       PID1002
parent:    FgmilR-7dps-78
paralog:   
locus:     NC_026476.1:7006499-7006585
matures:   ['UAGGUCUUGCCAUCAUCGUCGA', 'GGCGAUCUUGGUCAUGGGACCUGGG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026476.1:7006499-7006585

1 out of bounds
7 alignments
7 proper strand
4 stranded perfect matches

        ***************************                ************************            
CUUCAAUCUGGGCGAUCUUGGUCAUGGGACCUGGGGAUUUGGAUCCCUGAAUGUAGGUCUUGCCAUCAUCGUCGAAUAGAAUGCUAG
...((.((((((((((..((((...(((((((((((((....))))))......)))))))))))..))))))...)))).))....
-----------------------------------------------------UAGGUCUUGCCAUCAUCGUCGA------------ l=22 a=4 c
----------GGCGAUCUUGGUCAUGGGACCUGGG---------------------------------------------------- l=25 a=0 c*
-----------------------------------------------------UAGGUCUUGCCAUCAUCGUCGA------------ l=22 a=4 ma
----------GGCGAUCUUGGUCAUGGGACCUGGG---------------------------------------------------- l=25 a=0 ma*

-------------------------------------------UCCCUGAAUGUAGGUCUUGCCc---------------------- l=22 a=1 
---------------------------------------------------UGUAGGUCUUGCCAUuAUCGUCGAA----------- l=25 a=1 
-----------------------------------------------------UAGGUCUUGCCAUCAUCGUCGA------------ l=22 a=4 (c,ma)
------------------------------------------------------------UGCCAUCAUCGUCGAAUAGAAUa---- l=23 a=1 

mb-01011
ax-1011011
ku-01
ss-111111101110
fn-111
